Statistical
Bayesian WISCA
Weighted-incidence syndromic combination antibiograms (WISCA) with Bayesian modeling.
RbrmsStan
Infectious Disease Epidemiology Active
Tools / Methods
Methodological tools
Statistical, epidemiological, and predictive methods developed by the research group in R and Python to support clinical decision-making and population-level analysis.
Predictive
Dengue Forecast
Probabilistic dengue forecasting and early warning for all 32 states of Mexico.
RGradient boostingBayesianConformal prediction
Infectious Disease Epidemiology Beta
Pipeline
Microbial genomics pipeline (WGS)
Assembly, typing, and genotypic resistance from sequencing data.
NextflowSPAdesABRicatePython
Molecular Biology and Biomarkers Active
Statistical
Epidemiological time series
Disease trends, seasonality, and the reproduction number.
REpiEstimforecast
Population Data Science Active
Statistical
Spatial analysis and population-level determinants
Spatial autocorrelation and determinants at the municipal scale.
Rsfspdep
Population Data Science In development
Stack R · Python · Stan / brms · sf · spdep · EpiEstim · Nextflow · tidyverse